Transcript: ENSDART00000145047.2 si:ch211-59h6.1-201

Description

si:ch211-59h6.1 [Source:ZFIN;Acc:ZDB-GENE-091204-418]

Location

Chromosome 22: 7,694,439-7,700,179 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 17 domains and features, is associated with 2 variant alleles and maps to 119 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000013022.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000193046.1	si:ch211-59h6.1-202	5128	696aa	ENSDARP00000149709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q6G2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000145047.2	si:ch211-59h6.1-201	901	300aa	ENSDARP00000116746.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R0S0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 901 bps, Translation length: 300 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000145047.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000145047.2 si:ch211-59h6.1-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000145047.2 si:ch211-59h6.1-201

Summary

About Us

Get help

Our sister sites

Follow us