Transcript: ENSDART00000144985.2 setdb1a-203

Description

SET domain bifurcated histone lysine methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2421]

Location

About this transcript

This transcript has 3 exons, is associated with 194 variant alleles and maps to 85 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000088336.6	setdb1a-202	4840	1436aa	ENSDARP00000082769.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1L8U8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000060442.7	setdb1a-201	7696	1436aa	ENSDARP00000060441.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1L8U8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144985.2	setdb1a-203	493	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 493 bps,

Version

ENSDART00000144985.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.