Transcript: ENSDART00000144821.2 mcf2la-203

Description

mcf.2 cell line derived transforming sequence-like a [Source:ZFIN;Acc:ZDB-GENE-090312-122]

Gene Synonyms

mcf2l, si:dkey-269p14.1

Location

Chromosome 1: 46,579,885-46,590,637 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 14 domains and features, is associated with 4 variant alleles and maps to 16 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000075859.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000114083.5	mcf2la-201	4010	1166aa	ENSDARP00000103362.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q841	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000166028.2	mcf2la-204	3541	1157aa	ENSDARP00000139585.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ISB6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000144821.2	mcf2la-203	637	213aa	ENSDARP00000122871.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QQR4	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000134291.2	mcf2la-202	195	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 637 bps, Translation length: 213 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000144821.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000144821.2 mcf2la-203

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Transcript: ENSDART00000144821.2 mcf2la-203

Summary

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