Transcript: ENSDART00000144768.4 smpdl3a-202

Description

sphingomyelin phosphodiesterase acid like 3A [Source:ZFIN;Acc:ZDB-GENE-050327-61]

Gene Synonyms

si:ch211-199i15.3, zgc:113352

Location

About this transcript

This transcript has 6 exons, is annotated with 5 domains and features, is associated with 500 variant alleles and maps to 74 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000075096.4	smpdl3a-201	1589	441aa	ENSDARP00000069581.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q7D3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144768.4	smpdl3a-202	894	210aa	ENSDARP00000116492.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R1T9	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 894 bps, Translation length: 210 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000144768.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.