Transcript: ENSDART00000144767.3 gabra1-202

Description

gamma-aminobutyric acid (GABA) A receptor, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-061013-194]

Gene Synonyms

zgc:153566

Location

About this transcript

This transcript has 2 exons, is annotated with 18 domains and features, is associated with 306 variant alleles and maps to 102 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166148.2	gabra1-203	2305	459aa	ENSDARP00000134688.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08BJ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000100000.5	gabra1-201	1417	459aa	ENSDARP00000090772.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08BJ3	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144767.3	gabra1-202	1077	174aa	ENSDARP00000119124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R2E6	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,077 bps, Translation length: 174 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000144767.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.