Transcript: ENSDART00000144535.2 rabl3-204

Description

RAB, member of RAS onco family-like 3 [Source:ZFIN;Acc:ZDB-GENE-040808-11]

Gene Synonyms

fb40b02, wu:fb40b02, zgc:100876

Location

Chromosome 9: 32,649,076-32,651,437 forward strand.

About this transcript

This transcript has 5 exons, is associated with 310 variant alleles and maps to 233 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000040959.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136136.3	rabl3-203	1321	233aa	ENSDARP00000115081.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TNS7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172033.2	rabl3-205	1258	233aa	ENSDARP00000133137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TNS7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000189909.1	rabl3-206	342	114aa	ENSDARP00000156913.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000123466.4	rabl3-201	916	137aa	ENSDARP00000110347.2	Nonsense mediated decay	-	-
ENSDART00000144535.2	rabl3-204	663	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000134743.2	rabl3-202	517	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 663 bps,

Version

ENSDART00000144535.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000144535.2 rabl3-204

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Transcript: ENSDART00000144535.2 rabl3-204

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