Transcript: ENSDART00000144521.4 si:ch211-243j20.2-202

Description

si:ch211-243j20.2 [Source:ZFIN;Acc:ZDB-GENE-041014-345]

Location

About this transcript

This transcript has 6 exons, is associated with 720 variant alleles and maps to 51 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000045850.6	si:ch211-243j20.2-201	3145	541aa	ENSDARP00000045849.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QGS0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144521.4	si:ch211-243j20.2-202	805	191aa	ENSDARP00000118837.2	Nonsense mediated decay	Q5TZ52	-
ENSDART00000153105.2	si:ch211-243j20.2-203	493	86aa	ENSDARP00000127172.1	Nonsense mediated decay	U3JAA7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 805 bps, Translation length: 191 residues

Version

ENSDART00000144521.4

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.