Transcript: ENSDART00000144510.2 zmat5-202

Description

zinc finger, matrin-type 5 [Source:NCBI gene;Acc:445314]

Gene Synonyms

zgc:101022

Location

About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 354 variant alleles and maps to 168 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000051357.8	zmat5-201	860	173aa	ENSDARP00000051356.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0S517	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000144510.2	zmat5-202	857	181aa	ENSDARP00000117835.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0S518	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 857 bps, Translation length: 181 residues

Version

ENSDART00000144510.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.