Transcript: ENSDART00000144328.2 hif1aa-202

Description

hypoxia inducible factor 1 subunit alpha a [Source:ZFIN;Acc:ZDB-GENE-080917-55]

Gene Synonyms

HIF1A, Hif1b

Location

About this transcript

This transcript has 10 exons, is associated with 232 variant alleles and maps to 75 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000044282.7	hif1aa-201	2154	717aa	ENSDARP00000044281.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QNB9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000147222.3	hif1aa-203	2204	708aa	ENSDARP00000114543.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QEA3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000144328.2	hif1aa-202	1294	189aa	ENSDARP00000123106.1	Nonsense mediated decay	F1QFL2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 10, Coding exons: 6, Transcript length: 1,294 bps, Translation length: 189 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000144328.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.