Transcript: ENSDART00000144299.4 si:ch73-15n24.1-203

Description

si:ch73-15n24.1 [Source:ZFIN;Acc:ZDB-GENE-030131-1323]

Location

Chromosome 19: 9,295,305-9,340,135 forward strand.

About this transcript

This transcript has 21 exons, is annotated with 8 domains and features, is associated with 337 variant alleles and maps to 203 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000079901.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000132255.4	si:ch73-15n24.1-201	1002	195aa	ENSDARP00000113781.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WWA4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000144299.4	si:ch73-15n24.1-203	2342	617aa	ENSDARP00000121324.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000136241.3	si:ch73-15n24.1-202	782	235aa	ENSDARP00000115149.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 21, Coding exons: 20, Transcript length: 2,342 bps, Translation length: 617 residues

Version

ENSDART00000144299.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000144299.4 si:ch73-15n24.1-203

Summary

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Transcript: ENSDART00000144299.4 si:ch73-15n24.1-203

Summary

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