Transcript: ENSDART00000144169.2 si:ch211-102c2.8-202

Description

si:ch211-102c2.8 [Source:ZFIN;Acc:ZDB-GENE-081104-98]

Location

Chromosome 5: 26,765,275-26,771,984 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 9 domains and features, is associated with 278 variant alleles and maps to 53 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000093823.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000147620.2	si:ch211-102c2.8-203	1485	431aa	ENSDARP00000115234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000144169.2	si:ch211-102c2.8-202	1038	331aa	ENSDARP00000119602.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000133053.2	si:ch211-102c2.8-201	870	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 1,038 bps, Translation length: 331 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000144169.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000144169.2 si:ch211-102c2.8-202

Summary

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Transcript: ENSDART00000144169.2 si:ch211-102c2.8-202

Summary

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