Transcript: ENSDART00000144061.3 ptpdc1b-202

Description

protein tyrosine phosphatase domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-090312-138]

Location

About this transcript

This transcript has 10 exons, is annotated with 13 domains and features, is associated with 603 variant alleles and maps to 104 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000144061.3	ptpdc1b-202	2522	658aa	ENSDARP00000122255.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FBM8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000146255.2	ptpdc1b-203	919	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000137640.3	ptpdc1b-201	675	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,522 bps, Translation length: 658 residues

Version

ENSDART00000144061.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.