Transcript: ENSDART00000144023.2 sh3gl3b-202

Description

SH3-domain GRB2-like 3b [Source:NCBI gene (formerly Entrezgene);Acc:393150]

Location

Chromosome 25: 19,530,017-19,535,811 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 18 domains and features, is associated with 12 variant alleles and maps to 151 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000007302.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000006512.7	sh3gl3b-201	2161	386aa	ENSDARP00000007836.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TGT7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000184279.1	sh3gl3b-203	2975	375aa	ENSDARP00000151600.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QD99	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000144023.2	sh3gl3b-202	873	179aa	ENSDARP00000117769.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 873 bps, Translation length: 179 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000144023.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000144023.2 sh3gl3b-202

Summary

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Transcript: ENSDART00000144023.2 sh3gl3b-202

Summary

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