Transcript: ENSDART00000143948.3 rfc1-201

Description

replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]

Gene Synonyms

si:dkey-170e5.1, zgc:162875

Location

About this transcript

This transcript has 24 exons, is annotated with 48 domains and features, is associated with 451 variant alleles and maps to 272 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000143948.3	rfc1-201	4162	1147aa	ENSDARP00000113369.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q5P6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000181658.1	rfc1-204	2981	193aa	ENSDARP00000156035.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DRM3	-
ENSDART00000146575.2	rfc1-203	660	126aa	ENSDARP00000119715.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000144004.2	rfc1-202	314	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 24, Coding exons: 24, Transcript length: 4,162 bps, Translation length: 1,147 residues

Version

ENSDART00000143948.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.