Transcript: ENSDART00000143901.4 prg4b-202

Description

proteoglycan 4b [Source:ZFIN;Acc:ZDB-GENE-041014-324]

Gene Synonyms

prg4, si:dkey-97o5.3, zgc:122988

Location

About this transcript

This transcript has 13 exons, is annotated with 42 domains and features, is associated with 398 variant alleles and maps to 335 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000143901.4	prg4b-202	2826	711aa	ENSDARP00000112635.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1REF9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134305.2	prg4b-201	558	115aa	ENSDARP00000118320.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,826 bps, Translation length: 711 residues

Version

ENSDART00000143901.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.