Transcript: ENSDART00000143766.3 tbc1d4-201

Description

TBC1 domain family, member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-9881]

Gene Synonyms

cb53, sb:cb53, si:ch211-222g23.4

Location

Chromosome 9: 30,585,600-30,639,362 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 41 domains and features, is associated with 1338 variant alleles and maps to 112 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000075156.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000143766.3	tbc1d4-201	4019	1230aa	ENSDARP00000114595.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QE75	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000160590.2	tbc1d4-203	3186	1061aa	ENSDARP00000132470.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ICD0	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000189815.1	tbc1d4-204	3081	1026aa	ENSDARP00000151394.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QCT2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000191310.1	tbc1d4-205	877	207aa	ENSDARP00000156949.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RZV3	-
ENSDART00000147813.2	tbc1d4-202	756	202aa	ENSDARP00000114090.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QC96	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 4,019 bps, Translation length: 1,230 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000143766.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000143766.3 tbc1d4-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000143766.3 tbc1d4-201

Summary

About Us

Get help

Our sister sites

Follow us