Transcript: ENSDART00000143680.3 trdn-204

Description

triadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]

Gene Synonyms

si:dkey-72g4.2, zgc:162523

Location

Chromosome 20: 40,150,612-40,164,408 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 327 variant alleles and maps to 259 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000041779.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000101041.6	trdn-201	2641	785aa	ENSDARP00000091815.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000121818.3	trdn-203	1872	226aa	ENSDARP00000110075.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000109681.4	trdn-202	803	142aa	ENSDARP00000098762.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000143680.3	trdn-204	771	90aa	ENSDARP00000121870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000153203.2	trdn-205	625	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 771 bps, Translation length: 90 residues

Version

ENSDART00000143680.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000143680.3 trdn-204

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000143680.3 trdn-204

Summary

About Us

Get help

Our sister sites

Follow us