Transcript: ENSDART00000143497.2 zgc:91944-203

Description

zgc:91944 [Source:ZFIN;Acc:ZDB-GENE-040718-417]

Location

Chromosome 19: 32,588,891-32,600,638 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 3 domains and features, is associated with 411 variant alleles and maps to 158 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000035887.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052101.7	zgc:91944-201	3022	469aa	ENSDARP00000052100.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RAA7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000134149.3	zgc:91944-202	3127	465aa	ENSDARP00000122517.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000187858.1	zgc:91944-204	2962	469aa	ENSDARP00000150655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RAA7	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000143497.2	zgc:91944-203	798	88aa	ENSDARP00000116159.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 798 bps, Translation length: 88 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000143497.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000143497.2 zgc:91944-203

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Transcript: ENSDART00000143497.2 zgc:91944-203

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