Transcript: ENSDART00000143436.3 rpf1-201

Description

ribosome production factor 1 homolog [Source:ZFIN;Acc:ZDB-GENE-040625-177]

Gene Synonyms

bxdc5, zgc:86604

Location

About this transcript

This transcript has 9 exons, is annotated with 12 domains and features, is associated with 405 variant alleles and maps to 141 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000143436.3	rpf1-201	1523	352aa	ENSDARP00000117162.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000157928.2	rpf1-203	1213	249aa	ENSDARP00000139153.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IWG2	-
ENSDART00000147115.2	rpf1-202	758	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,523 bps, Translation length: 352 residues

Version

ENSDART00000143436.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.