Transcript: ENSDART00000143292.2 col28a1a-203

Description

collagen, type XXVIII, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070705-84]

Location

Chromosome 19: 25,504,645-25,506,314 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 162 variant alleles and maps to 202 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000077084.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000112808.5	col28a1a-201	5252	1170aa	ENSDARP00000102543.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0H5W1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144300.2	col28a1a-204	940	313aa	ENSDARP00000113514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000132934.3	col28a1a-202	936	312aa	ENSDARP00000117274.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000143292.2	col28a1a-203	730	133aa	ENSDARP00000118649.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 730 bps, Translation length: 133 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000143292.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000143292.2 col28a1a-203

Summary

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Transcript: ENSDART00000143292.2 col28a1a-203

Summary

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