Transcript: ENSDART00000143264.2 lrrc71-203

Description

leucine rich repeat containing 71 [Source:ZFIN;Acc:ZDB-GENE-060503-892]

Location

About this transcript

This transcript has 7 exons, is associated with 159 variant alleles and maps to 52 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052898.9	lrrc71-201	1956	481aa	ENSDARP00000052897.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1L8U9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139781.2	lrrc71-202	466	138aa	ENSDARP00000126179.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000143264.2	lrrc71-203	559	51aa	ENSDARP00000125943.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 2, Transcript length: 559 bps, Translation length: 51 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000143264.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.