Transcript: ENSDART00000143259.3 si:dkey-58f10.11-203

Description

si:dkey-58f10.11 [Source:ZFIN;Acc:ZDB-GENE-060526-313]

Location

Chromosome 5: 38,680,061-38,682,282 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 262 variant alleles and maps to 199 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000094935.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000143259.3	si:dkey-58f10.11-203	1416	201aa	ENSDARP00000116305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8N7UYZ6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000131879.2	si:dkey-58f10.11-201	1303	117aa	ENSDARP00000112731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000132763.2	si:dkey-58f10.11-202	729	191aa	ENSDARP00000118995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,416 bps, Translation length: 201 residues

Version

ENSDART00000143259.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000143259.3 si:dkey-58f10.11-203

Summary

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Transcript: ENSDART00000143259.3 si:dkey-58f10.11-203

Summary

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