Transcript: ENSDART00000143096.2 nr5a5-203

Description

nuclear receptor subfamily 5, group A, member 5 [Source:ZFIN;Acc:ZDB-GENE-030131-4652]

Gene Synonyms

fd46g06, ff1c, wu:fd46g06, zgc:111842, zgc:153866

Location

Chromosome 3: 53,461,576-53,465,249 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 9 domains and features, is associated with 200 variant alleles and maps to 59 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000039116.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000125515.3	nr5a5-202	1748	537aa	ENSDARP00000105488.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DKN2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000057123.8	nr5a5-201	2049	511aa	ENSDARP00000057122.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKV6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000143096.2	nr5a5-203	765	213aa	ENSDARP00000113112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QGY9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148131.2	nr5a5-204	758	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 765 bps, Translation length: 213 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000143096.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000143096.2 nr5a5-203

Summary

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Transcript: ENSDART00000143096.2 nr5a5-203

Summary

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