Transcript: ENSDART00000143087.3 pabpc1b-203

Description

poly A binding protein, cytoplasmic 1 b [Source:ZFIN;Acc:ZDB-GENE-050308-1]

Location

About this transcript

This transcript has 4 exons, is annotated with 15 domains and features, is associated with 318 variant alleles and maps to 23 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000032474.11	pabpc1b-201	2804	634aa	ENSDARP00000034822.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P3L1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000143087.3	pabpc1b-203	742	207aa	ENSDARP00000117257.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JLJ5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151056.2	pabpc1b-204	1062	142aa	ENSDARP00000126202.1	Nonsense mediated decay	I3ITD9	-
ENSDART00000136324.2	pabpc1b-202	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 742 bps, Translation length: 207 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000143087.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.