Transcript: ENSDART00000143059.2 ncoa6-204

Description

nuclear receptor coactivator 6 [Source:ZFIN;Acc:ZDB-GENE-080403-12]

Gene Synonyms

gb:dq017635, wu:fb25d11

Location

Chromosome 23: 2,717,984-2,721,386 forward strand.

About this transcript

This transcript has 2 exons, is associated with 84 variant alleles and maps to 29 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000071272.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000105286.5	ncoa6-202	8683	2271aa	ENSDARP00000096057.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R869	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000182512.1	ncoa6-206	8635	2255aa	ENSDARP00000153734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000105284.6	ncoa6-201	3829	1168aa	ENSDARP00000096055.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000147953.2	ncoa6-205	1460	486aa	ENSDARP00000120410.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000137641.2	ncoa6-203	668	154aa	ENSDARP00000116049.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000143059.2	ncoa6-204	835	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 835 bps,

Version

ENSDART00000143059.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000143059.2 ncoa6-204

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Transcript: ENSDART00000143059.2 ncoa6-204

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