Transcript: ENSDART00000142951.2 si:dkey-23a23.2-202

Description

si:dkey-23a23.2 [Source:ZFIN;Acc:ZDB-GENE-060503-158]

Location

Chromosome 4: 29,041,259-29,050,235 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 350 variant alleles and maps to 141 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000023036.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000102846.5	si:dkey-23a23.2-201	3409	659aa	ENSDARP00000093620.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R0K3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000181488.1	si:dkey-23a23.2-204	4848	596aa	ENSDARP00000153080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QE11	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000181276.1	si:dkey-23a23.2-203	4802	596aa	ENSDARP00000154930.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QIC8	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000142951.2	si:dkey-23a23.2-202	1318	386aa	ENSDARP00000123208.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1L934	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,318 bps, Translation length: 386 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000142951.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000142951.2 si:dkey-23a23.2-202

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Transcript: ENSDART00000142951.2 si:dkey-23a23.2-202

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