Transcript: ENSDART00000142756.2 ablim1b-205

Description

actin binding LIM protein 1b [Source:ZFIN;Acc:ZDB-GENE-050327-91]

Gene Synonyms

si:dkeyp-84e12.1, zgc:112954

Location

Chromosome 12: 30,168,342-30,204,839 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 9 domains and features, is associated with 310 variant alleles and maps to 63 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000045064.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000042572.8	ablim1b-201	1652	354aa	ENSDARP00000042571.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q58EF7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000153025.3	ablim1b-207	6920	758aa	ENSDARP00000127435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000179904.1	ablim1b-209	1273	351aa	ENSDARP00000155018.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000193405.1	ablim1b-210	879	292aa	ENSDARP00000153503.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000142756.2	ablim1b-205	759	201aa	ENSDARP00000118444.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000132335.2	ablim1b-202	331	110aa	ENSDARP00000112634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000153394.2	ablim1b-208	261	33aa	ENSDARP00000127129.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145628.2	ablim1b-206	771	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000138252.3	ablim1b-203	766	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000140600.2	ablim1b-204	846	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 759 bps, Translation length: 201 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000142756.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000142756.2 ablim1b-205

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Transcript: ENSDART00000142756.2 ablim1b-205

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