Transcript: ENSDART00000142717.3 tpm4a-205

Description

tropomyosin 4a [Source:ZFIN;Acc:ZDB-GENE-040426-2185]

Gene Synonyms

TPM4-1, tpm4, wu:fb06e07, zgc:103436, zgc:63909

Location

Chromosome 22: 15,578,710-15,587,360 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 17 domains and features, is associated with 261 variant alleles and maps to 182 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000023963.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000036075.8	tpm4a-202	2384	284aa	ENSDARP00000034733.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R412	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000123125.3	tpm4a-203	2842	248aa	ENSDARP00000105889.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7T3F0	-
ENSDART00000142717.3	tpm4a-205	1261	204aa	ENSDARP00000114668.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000009054.8	tpm4a-201	1119	284aa	ENSDARP00000015843.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000138978.3	tpm4a-204	743	204aa	ENSDARP00000121408.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,261 bps, Translation length: 204 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000142717.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000142717.3 tpm4a-205

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Transcript: ENSDART00000142717.3 tpm4a-205

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