Transcript: ENSDART00000142680.3 sltm-205

Description

SAFB-like, transcription modulator [Source:ZFIN;Acc:ZDB-GENE-040426-2647]

Gene Synonyms

wu:fd12b08, zgc:65985

Location

Chromosome 7: 30,553,606-30,560,400 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 10 domains and features, is associated with 218 variant alleles and maps to 202 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000052728.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142818.4	sltm-207	9342	983aa	ENSDARP00000115812.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q6F9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000182409.1	sltm-209	2002	458aa	ENSDARP00000154458.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000139546.2	sltm-203	805	269aa	ENSDARP00000120316.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000142680.3	sltm-205	449	142aa	ENSDARP00000142810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000142480.3	sltm-204	595	131aa	ENSDARP00000142795.1	Nonsense mediated decay	-	-
ENSDART00000173546.2	sltm-208	680	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000142723.4	sltm-206	1290	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000138298.2	sltm-201	740	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000139134.2	sltm-202	445	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 449 bps, Translation length: 142 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000142680.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000142680.3 sltm-205

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Transcript: ENSDART00000142680.3 sltm-205

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