Transcript: ENSDART00000142673.2 smc5-204

Description

structural maintenance of chromosomes 5 [Source:ZFIN;Acc:ZDB-GENE-061013-288]

Gene Synonyms

pufa, pum3, wu:fb70d10, wu:fi47h05, zgc:152845, zgc:66377

Location

Chromosome 10: 15,618,216-15,619,015 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 100 variant alleles and maps to 128 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000044282.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000101191.5	smc5-201	2447	697aa	ENSDARP00000091965.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QEQ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000122170.4	smc5-202	3966	1073aa	ENSDARP00000111416.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F0W1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000186559.1	smc5-206	3831	1028aa	ENSDARP00000146284.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000138389.2	smc5-203	1384	445aa	ENSDARP00000117735.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000142673.2	smc5-204	731	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000147693.2	smc5-205	788	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 731 bps,

Version

ENSDART00000142673.2

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000142673.2 smc5-204

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Transcript: ENSDART00000142673.2 smc5-204

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