Transcript: ENSDART00000142653.4 grm1a-202

Description

glutamate receptor, metabotropic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7893]

Gene Synonyms

fj39d05, si:ch211-51a19.1, wu:fj39d05

Location

About this transcript

This transcript has 9 exons, is annotated with 63 domains and features, is associated with 904 variant alleles and maps to 261 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142653.4	grm1a-202	5021	1153aa	ENSDARP00000123024.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R9YJL7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000030324.8	grm1a-201	3589	1145aa	ENSDARP00000033374.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4J6Q8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 5,021 bps, Translation length: 1,153 residues

Version

ENSDART00000142653.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.