Transcript: ENSDART00000142645.2 zgc:153317-204

Description

zgc:153317 [Source:ZFIN;Acc:ZDB-GENE-060825-309]

Location

Chromosome 18: 5,526,169-5,527,080 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 316 variant alleles and maps to 121 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000092903.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000146209.3	zgc:153317-206	717	86aa	ENSDARP00000112838.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RE72	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000132498.3	zgc:153317-201	651	59aa	ENSDARP00000116790.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000145400.2	zgc:153317-205	266	50aa	ENSDARP00000116636.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000139141.3	zgc:153317-203	1824	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000134228.2	zgc:153317-202	840	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000142645.2	zgc:153317-204	830	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 830 bps,

Version

ENSDART00000142645.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000142645.2 zgc:153317-204

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000142645.2 zgc:153317-204

Summary

About Us

Get help

Our sister sites

Follow us