Transcript: ENSDART00000142621.2 top1-203

Description

DNA topoisomerase I [Source:ZFIN;Acc:ZDB-GENE-030131-5390]

Gene Synonyms

fd15f07, wu:fd15f07

Location

Chromosome 23: 2,778,813-2,779,863 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 7 domains and features, is associated with 168 variant alleles and maps to 74 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000086775.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000129719.4	top1-201	1686	561aa	ENSDARP00000106197.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FE49	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133524.3	top1-202	1666	555aa	ENSDARP00000122700.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QTQ7	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000146475.2	top1-204	315	65aa	ENSDARP00000120126.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QHI7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000142621.2	top1-203	253	84aa	ENSDARP00000113557.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RAD0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 253 bps, Translation length: 84 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000142621.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000142621.2 top1-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000142621.2 top1-203

Summary

About Us

Get help

Our sister sites

Follow us