Transcript: ENSDART00000142617.3 vps36-203

Description

vacuolar protein sorting 36 homolog [Source:NCBI gene;Acc:335810]

Gene Synonyms

fj33d07, wu:fj33d07, zgc:55965

Location

Chromosome 10: 24,643,081-24,662,729 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 445 variant alleles and maps to 49 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000057021.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000079597.4	vps36-201	1904	382aa	ENSDARP00000074049.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QFF9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000190695.1	vps36-206	4791	410aa	ENSDARP00000154878.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QPX7	-
ENSDART00000142617.3	vps36-203	658	147aa	ENSDARP00000113042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QH92	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000139641.3	vps36-202	610	161aa	ENSDARP00000122484.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QGR9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147974.2	vps36-205	908	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000142893.2	vps36-204	478	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 658 bps, Translation length: 147 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000142617.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000142617.3 vps36-203

Summary

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Transcript: ENSDART00000142617.3 vps36-203

Summary

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