Transcript: ENSDART00000142569.2 SPECC1L-201

Description

sperm antigen with calponin homology and coiled-coil domains 1-like b [Source:ZFIN;Acc:ZDB-GENE-090423-1]

Location

Chromosome 21: 13,233,377-13,284,660 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 39 domains and features, is associated with 640 variant alleles and maps to 138 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000042232.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142569.2	SPECC1L-201	3722	1121aa	ENSDARP00000122137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FG55	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000189498.1	SPECC1L-203	2847	948aa	ENSDARP00000155928.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000146062.2	SPECC1L-202	317	105aa	ENSDARP00000115314.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 16, Coding exons: 15, Transcript length: 3,722 bps, Translation length: 1,121 residues

Version

ENSDART00000142569.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000142569.2 SPECC1L-201

Summary

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Transcript: ENSDART00000142569.2 SPECC1L-201

Summary

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