Transcript: ENSDART00000142533.2 pdzrn3a-202

Description

PDZ domain containing RING finger 3a [Source:ZFIN;Acc:ZDB-GENE-090313-307]

Gene Synonyms

PDZRN3-like, si:dkey-31e3.5

Location

About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 144 variant alleles and maps to 13 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000112965.4	pdzrn3a-201	3051	1016aa	ENSDARP00000100414.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FGS6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142533.2	pdzrn3a-202	261	87aa	ENSDARP00000122882.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QQQ2	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 261 bps, Translation length: 87 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000142533.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.