Transcript: ENSDART00000142519.3 oxct1a-204

Description

3-oxoacid CoA transferase 1a [Source:ZFIN;Acc:ZDB-GENE-040723-3]

Gene Synonyms

SAGm18B, oxct1, scot, wu:fj36f06, wu:fj48g08, zgc:92003

Location

Chromosome 8: 31,777,633-31,808,786 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 950 variant alleles and maps to 76 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000013063.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000013434.11	oxct1a-201	2666	525aa	ENSDARP00000002234.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6AZB2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000161121.2	oxct1a-205	2131	563aa	ENSDARP00000135220.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000141226.2	oxct1a-203	830	113aa	ENSDARP00000112626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000142519.3	oxct1a-204	719	78aa	ENSDARP00000118282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000137302.2	oxct1a-202	492	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 719 bps, Translation length: 78 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000142519.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000142519.3 oxct1a-204

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Transcript: ENSDART00000142519.3 oxct1a-204

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