Transcript: ENSDART00000142489.3 slco5a1b-204

Description

solute carrier organic anion transporter family member 5A1b [Source:ZFIN;Acc:ZDB-GENE-070912-587]

Gene Synonyms

Oatp5a2, si:dkey-7l6.4, slco5a2

Location

About this transcript

This transcript has 8 exons, is annotated with 18 domains and features, is associated with 672 variant alleles and maps to 50 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142489.3	slco5a1b-204	1312	375aa	ENSDARP00000116625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000127136.3	slco5a1b-202	4370	549aa	ENSDARP00000109447.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EYQ1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000135529.2	slco5a1b-203	1147	382aa	ENSDARP00000121977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000121452.3	slco5a1b-201	464	43aa	ENSDARP00000104619.2	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,312 bps, Translation length: 375 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000142489.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.