Transcript: ENSDART00000142489.3 slco5a1a-207

Description

solute carrier organic anion transporter family member 5A1a [Source:ZFIN;Acc:ZDB-GENE-090316-1]

Gene Synonyms

Oatp5a1, Oatp5a2, slco5a1

Location

About this transcript

This transcript has 8 exons, is annotated with 10 domains and features, is associated with 672 variant alleles and maps to 49 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142489.3	slco5a1a-207	1312	375aa	ENSDARP00000116625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QB40	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000127136.3	slco5a1a-205	4370	549aa	ENSDARP00000109447.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EYQ1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000135529.2	slco5a1a-206	1147	382aa	ENSDARP00000121977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R5Q0	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000121452.3	slco5a1a-204	464	43aa	ENSDARP00000104619.2	Nonsense mediated decay	E9QB47	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,312 bps, Translation length: 375 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000142489.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.