Transcript: ENSDART00000142474.3 phc2a-204

Description

polyhomeotic homolog 2a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-020312-1]

Gene Synonyms

cb218, edr2, id:ibd2745, id:ibd5044, ph2, ph2[a], ph2[b], phc2, wu:fb98c05, wu:fc96f07, zgc:100775, zgc:123102

Location

Chromosome 23: 22,063,484-22,113,455 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 28 domains and features, is associated with 958 variant alleles and maps to 271 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000056695.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000054362.7	phc2a-201	2102	310aa	ENSDARP00000054361.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000142474.3	phc2a-204	3674	827aa	ENSDARP00000117469.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0A0MPJ3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000079212.6	phc2a-202	3487	827aa	ENSDARP00000073668.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0A0MPJ3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000132343.2	phc2a-203	854	259aa	ENSDARP00000118477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 3,674 bps, Translation length: 827 residues

Version

ENSDART00000142474.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000142474.3 phc2a-204

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000142474.3 phc2a-204

Summary

About Us

Get help

Our sister sites

Follow us