Transcript: ENSDART00000142465.3 ABCA1-202

Description

ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]

Location

About this transcript

This transcript has 49 exons, is annotated with 71 domains and features, is associated with 1618 variant alleles and maps to 283 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000167514.3	ABCA1-203	9626	2268aa	ENSDARP00000132417.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A446	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142465.3	ABCA1-202	9428	2268aa	ENSDARP00000114226.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A446	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139378.2	ABCA1-201	697	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 49, Coding exons: 49, Transcript length: 9,428 bps, Translation length: 2,268 residues

Version

ENSDART00000142465.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.