Transcript: ENSDART00000142460.4 NPHP3-201

Description

nephronophthisis 3 [Source:ZFIN;Acc:ZDB-GENE-091204-117]

Location

About this transcript

This transcript has 28 exons, is annotated with 33 domains and features, is associated with 941 variant alleles and maps to 97 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000110629.4	NPHP3-203	4554	1303aa	ENSDARP00000101271.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P0CI65	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142460.4	NPHP3-201	4536	1297aa	ENSDARP00000119076.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000175671.2	NPHP3-202	4385	1291aa	ENSDARP00000143907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 28, Coding exons: 27, Transcript length: 4,536 bps, Translation length: 1,297 residues

Version

ENSDART00000142460.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.