Transcript: ENSDART00000142425.2 iscub-203

Description

iron-sulfur cluster assembly enzyme b [Source:ZFIN;Acc:ZDB-GENE-050417-332]

Gene Synonyms

fj08f02, wu:fj08f02, zgc:110331

Location

About this transcript

This transcript has 5 exons, is associated with 245 variant alleles and maps to 171 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000036235.8	iscub-201	1063	164aa	ENSDARP00000033254.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QM53	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140541.2	iscub-202	642	126aa	ENSDARP00000120406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000142425.2	iscub-203	797	106aa	ENSDARP00000124124.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000146336.2	iscub-204	711	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 797 bps, Translation length: 106 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000142425.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.