Transcript: ENSDART00000142418.4 sgms1b-202

Description

sphingomyelin synthase 1b [Source:ZFIN;Acc:ZDB-GENE-061103-295]

Location

About this transcript

This transcript has 6 exons, is annotated with 29 domains and features, is associated with 915 variant alleles and maps to 133 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142418.4	sgms1b-202	2522	404aa	ENSDARP00000117358.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0JMN0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000164885.2	sgms1b-203	1219	404aa	ENSDARP00000135828.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0JMN0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139054.2	sgms1b-201	693	113aa	ENSDARP00000117698.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,522 bps, Translation length: 404 residues

Version

ENSDART00000142418.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.