Transcript: ENSDART00000142381.2 tmem50a-204

Description

transmembrane protein 50A [Source:ZFIN;Acc:ZDB-GENE-040426-2937]

Gene Synonyms

fj33b04, wu:fj33b04, zgc:55322

Location

Chromosome 13: 45,485,237-45,494,143 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 15 domains and features, is associated with 433 variant alleles and maps to 120 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000015757.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000134730.3	tmem50a-203	1687	164aa	ENSDARP00000120219.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803R8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000019774.7	tmem50a-201	1678	164aa	ENSDARP00000009902.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803R8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142381.2	tmem50a-204	582	150aa	ENSDARP00000116685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000188004.1	tmem50a-205	503	164aa	ENSDARP00000147889.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803R8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133635.2	tmem50a-202	923	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 582 bps, Translation length: 150 residues

Version

ENSDART00000142381.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000142381.2 tmem50a-204

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000142381.2 tmem50a-204

Summary

About Us

Get help

Our sister sites

Follow us