Transcript: ENSDART00000142320.2 nup98-204

Description

nucleoporin 98 and 96 [Source:ZFIN;Acc:ZDB-GENE-040426-1180]

Gene Synonyms

im:7151238, zgc:63593

Location

Chromosome 21: 40,377,506-40,384,101 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 284 variant alleles and maps to 63 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000074955.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000130950.3	nup98-202	6806	1814aa	ENSDARP00000110413.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F981	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000162500.2	nup98-205	8319	1807aa	ENSDARP00000131290.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IAQ8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000136068.3	nup98-203	6756	1803aa	ENSDARP00000118041.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000007981.7	nup98-201	2435	359aa	ENSDARP00000010304.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000142320.2	nup98-204	912	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 912 bps,

Version

ENSDART00000142320.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000142320.2 nup98-204

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Transcript: ENSDART00000142320.2 nup98-204

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