Transcript: ENSDART00000142313.2 si:dkeyp-46h3.8-201

Description

si:dkeyp-46h3.8 [Source:ZFIN;Acc:ZDB-GENE-060503-183]

Location

Chromosome 19: 27,548,459-27,550,768 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 21 domains and features, is associated with 277 variant alleles and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000093704.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142313.2	si:dkeyp-46h3.8-201	986	233aa	ENSDARP00000123406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KQ74	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000171967.2	si:dkeyp-46h3.8-202	3574	234aa	ENSDARP00000130991.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000179060.2	si:dkeyp-46h3.8-203	3079	234aa	ENSDARP00000144079.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 986 bps, Translation length: 233 residues

Version

ENSDART00000142313.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000142313.2 si:dkeyp-46h3.8-201

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Transcript: ENSDART00000142313.2 si:dkeyp-46h3.8-201

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