Transcript: ENSDART00000142178.2 plekha1a-202

Description

pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2780]

Location

Chromosome 17: 21,902,058-21,912,502 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 7 domains and features, is associated with 178 variant alleles and maps to 150 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000030064.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000165192.2	plekha1a-203	2443	401aa	ENSDARP00000133411.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000131929.3	plekha1a-201	2477	400aa	ENSDARP00000122375.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QH37	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000142178.2	plekha1a-202	1199	272aa	ENSDARP00000117249.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,199 bps, Translation length: 272 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000142178.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000142178.2 plekha1a-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000142178.2 plekha1a-202

Summary

About Us

Get help

Our sister sites

Follow us