Transcript: ENSDART00000142117.4 TAFA5-203

Description

TAFA chemokine like family member 5a [Source:ZFIN;Acc:ZDB-GENE-041210-344]

Location

Chromosome 4: 27,252,979-27,398,385 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 9 domains and features, is associated with 2729 variant alleles and maps to 139 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000069160.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000150553.2	TAFA5-202	399	132aa	ENSDARP00000125276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0WEJ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000100444.5	TAFA5-205	1736	111aa	ENSDARP00000091217.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QB79	-
ENSDART00000145806.3	TAFA5-201	962	131aa	ENSDARP00000114783.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BIC8	-
ENSDART00000142117.4	TAFA5-203	659	124aa	ENSDARP00000125559.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000182746.1	TAFA5-204	418	133aa	ENSDARP00000152769.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QIB8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 659 bps, Translation length: 124 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000142117.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000142117.4 TAFA5-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000142117.4 TAFA5-203

Summary

About Us

Get help

Our sister sites

Follow us