Transcript: ENSDART00000142100.2 gdpd4b-202

Description

glycerophosphodiester phosphodiesterase domain containing 4b [Source:ZFIN;Acc:ZDB-GENE-050309-133]

Gene Synonyms

im:7149998, si:dkey-163i6.6

Location

Chromosome 21: 22,313,252-22,325,124 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 14 domains and features, is associated with 357 variant alleles and maps to 73 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000079293.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142100.2	gdpd4b-202	1726	542aa	ENSDARP00000118442.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QIZ4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000191083.1	gdpd4b-203	1299	432aa	ENSDARP00000153164.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QL31	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000108701.4	gdpd4b-201	1257	418aa	ENSDARP00000104323.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F067	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 1,726 bps, Translation length: 542 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000142100.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000142100.2 gdpd4b-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000142100.2 gdpd4b-202

Summary

About Us

Get help

Our sister sites

Follow us