Summary
Sequence
- Exons
- cDNA
- Protein
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENSDART00000141840.2 SQSTM1-201

Description

sequestosome 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2204]

Location

About this transcript

This transcript has 3 exons, is associated with 212 variant alleles and maps to 141 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000140061.3	SQSTM1-203	1939	452aa	ENSDARP00000117113.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q5Z8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134366.2	SQSTM1-202	1010	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000141840.2	SQSTM1-201	531	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 531 bps,

Version

ENSDART00000141840.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.